CGenFF Suite

• CGenFF Suite Overview
• CGenFF Program
  • Background
  • CGenFF Using the SilcsBio GUI
  • CGenFF Using the CLI
• CGenFF for Covalent Ligands
  • CGenFF for Covalent Ligands Using the CLI
• Standard Molecular Dynamics (MD) Simulations
  • MD Simulations of a Protein and Ligand
  • MD Simulation for Membrane Proteins
  • MD Simulation with Probes
• CGenFF Parameter Optimizer
  • Usage
  • Example Usecase
  • Performing Dihedral Optimization in the Background
  • Including New Dihedral Parameters with CGenFF
  • Additional Output Information
  • Practical Considerations